A lightweight neuromorphological mesh skeletonizer.
Project description
skeliner
A lightweight skeletonizer that converts neuron meshes into biophysical‑modelling‑ready SWC morphologies. It heuristically detects the soma, extracts an acyclic center‑line skeleton, estimates per‑node radii, and bridges small gaps.
Installation
pip install skeliner
or
git clone https://github.com/berenslab/skeliner.git
pip install -e "skeliner[dev]"
Usage
See example notebooks for usage.
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