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A wrapper for generating Docker commands using regular sMRIPrep syntax

Project description

sMRIprep is a structural magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.

This is a lightweight Python wrapper to run sMRIPrep. It generates the appropriate Docker commands, providing an intuitive interface to running the sMRIPrep workflow in a Docker environment. Docker must be installed and running. This can be checked running

docker info

Please report any feedback to our GitHub repository and do not forget to credit all the authors of software that sMRIPrep uses.

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