BIDS integration into snakemake workflows
Project description
Snakemake + BIDS
This package allows you to build BIDS Apps using Snakemake. It offers:
Flexible data grabbing with PyBIDS, configurable solely by config file entries
Helper function for creating BIDS paths inside Snakemake workflows/rules
Command-line invocation of snakemake workflows with BIDS App compliance
Configurable argument parsing specified using the Snakemake workflow config
Execution either as command-line BIDS apps or via snakemake executable
To create an app, use the cookiecutter here: http://github.com/akhanf/snakebids-app
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