Snakemake executor plugin: slurm

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For documentation, see the Snakemake plugin catalog.

For development and testing, checkout this repo and (depending on your needs) do one of the following

  • Run pixi shell -e dev to open a development environment
  • Run pixi run test to run tests locally (requires a running slurm system)
  • To simultaneously develop the slurm-jobstep and the slurm plugin, uncommend and edit the line #snakemake-executor-plugin-slurm-jobstep = { path = "../snakemake-executor-plugin-slurm-jobstep", editable = true} in the pyproject.toml before running pixi shell -e dev.

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Avatar for johanneskoester from gravatar.com johanneskoester

Credits

Author: Christian Meesters

License

MIT

Requires

Python <4, >=3.11

Tags

cluster executor plugin slurm snakemake

Classifiers

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