Snakemake Storage Plugin Azure
Azure Blob Storage plugin for snakemake. For documentation and usage instructions, see the Snakemake Plugin Catalog.
Testing
Testing this plugin locally require the azurite storage emulator to be running locally. This can be setup using the following docker run command:
docker run -p 10000:10000 mcr.microsoft.com/azure-storage/azurite azurite-blob --blobHost 0.0.0.0
Then execute the tests:
poetry run coverage run -m pytest tests/tests.py
Example
The below example Snakefile and command will stream a file, test.txt, containing the text "Hello, World" to the azure blob: https://accountname.blob.core.windows.net/container/test.txt
rule touch:
output: "test.txt"
shell:
"echo 'Hello, World!' > {output}"
Command:
The storage account and container that the output file is streamed to is specified using the default-storage-prefix.
snakemake -j1 \
--default-storage-provider azure \
--default-storage-prefix "az://container"
--storage-azure-account-name accountname \
--verbose
1 maintainer
Metadata
1 maintainer
Release files for snakemake-storage-plugin-azure 0.4.4
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
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| snakemake_storage_plugin_azure-0.4.4.tar.gz | 7.0 kB | Without provenance | Details for snakemake_storage_plugin_azure-0.4.4.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| snakemake_storage_plugin_azure-0.4.4-py3-none-any.whl | Python 3 | none | any | Details for snakemake_storage_plugin_azure-0.4.4-py3-none-any.whl |
Total release size: 15.2 kB
Release files / snakemake_storage_plugin_azure-0.4.4.tar.gz
| Download URL | snakemake_storage_plugin_azure-0.4.4.tar.gz |
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| Size | 7.0 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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Release files / snakemake_storage_plugin_azure-0.4.4-py3-none-any.whl
| Download URL | snakemake_storage_plugin_azure-0.4.4-py3-none-any.whl |
|---|---|
| Size | 8.2 kB |
| Tags | Python 3 |
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Security for snakemake-storage-plugin-azure 0.4.4
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