Snakemake is a workflow management system that aims to reduce the complexity of creating workflows by providing a fast and comfortable execution environment, together with a clean and modern specification language in python style. Snakemake workflows are essentially Python scripts extended by declarative code to define rules. Rules describe how to create output files from input files.

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Credits

Author: Johannes Köster

License expression

MIT
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Requires

Python >=3.11

Provides Extra

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Release history Release notifications | RSS feed

This release

9.25.2

9.25.1

9.24.0

9.23.1

9.23.0

9.22.0

9.21.1

9.21.0

9.20.0

9.19.0

9.18.2

9.18.1

9.17.3

9.17.2

9.17.1

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9.16.3

9.16.2

9.16.1

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9.15.0

9.14.8

9.14.7

9.14.6

9.14.5

9.14.4

9.14.3

9.14.2

9.14.1

9.14.0

9.13.7

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9.13.3

9.13.2

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9.13.0

9.12.0

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9.9.0

9.8.2

9.8.1

9.8.0

9.7.1

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9.6.3

9.6.2

9.6.1

9.6.0

9.5.1

9.5.0

9.4.1

9.4.0

9.3.5

9.3.4

9.3.3

9.3.2

9.3.1

9.3.0

9.2.0

9.1.11

9.1.10

9.1.9

9.1.8

9.1.7

9.1.6

9.1.5

9.1.4

9.1.3

9.1.2

9.1.1

9.1.0

9.0.1

9.0.0

8.30.0

8.29.3

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8.28.0

8.27.1

8.27.0

8.26.0

8.25.5

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8.25.3

8.25.2

8.25.1

8.25.0

8.24.1

8.24.0

8.23.2

8.23.1

8.23.0

8.22.0

8.21.0

8.20.7

8.20.6

8.20.5

8.20.4

8.20.3

8.20.2

8.20.1

8.20.0

8.19.3

8.19.2

8.19.1

8.19.0

8.18.2

8.18.1

8.18.0

8.17.0

8.16.0

8.15.2

8.15.1

8.15.0

8.14.0

8.13.0

8.12.0

8.11.6

8.11.5

8.11.4

8.11.3

8.11.2

8.11.1

8.11.0

8.10.8

8.10.7

8.10.6

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8.10.3

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8.10.1

8.10.0

8.9.0

8.8.0

8.7.0

8.6.0

8.5.5

8.5.4

8.5.3

8.5.2

8.5.1

8.5.0

8.4.12

8.4.11

8.4.10

8.4.9

8.4.8

8.4.7

8.4.6

8.4.5

8.4.4

8.4.3

8.4.2

8.4.1

8.4.0

8.3.2

8.3.1

8.3.0

8.2.4

8.2.3

8.2.2

8.2.1

8.2.0

8.1.3

8.1.2

8.1.1

8.1.0

8.0.1

8.0.0

7.32.4

7.32.3

7.32.2

7.32.1

7.32.0

7.31.1

7.31.0

7.30.2

7.30.1

7.30.0

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7.28.3

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7.28.1

7.28.0

7.26.0

7.25.4

7.25.3

7.25.2

7.25.1

7.25.0

7.24.2

7.24.1

7.24.0

7.23.1

7.23.0

7.22.0

7.21.0

7.20.0

7.19.1

7.19.0

7.18.2

7.18.1

7.18.0

7.17.1

7.17.0

7.16.2

7.16.1

7.16.0

7.15.2

7.15.1

7.15.0

7.14.2

7.14.1

7.14.0

7.13.0

7.12.1

7.12.0

7.11.0

7.10.0

7.9.0

7.8.5

7.8.3

7.8.2

7.8.1

7.8.0

7.7.0

7.6.2

7.6.1

7.6.0

7.5.0

7.4.0

7.3.8

7.3.7

7.3.6

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7.3.4

7.3.3

7.3.2

7.3.1

7.3.0

7.2.1

7.2.0

7.1.1

7.1.0

7.0.4

7.0.3

7.0.2

7.0.1

7.0.0

6.15.5

6.15.4

6.15.3

6.15.2

6.15.1

6.15.0

6.14.0

6.13.1

6.13.0

6.12.3

6.12.2

6.12.1

6.12.0

6.11.1

6.11.0

6.10.0

6.9.1

6.9.0

6.8.2

6.8.1

6.8.0

6.7.0

6.6.1

6.6.0

6.5.5

6.5.3

6.5.2

6.5.1

6.5.0

6.4.1

6.4.0

6.3.0

6.2.1

6.2.0

6.1.2

6.1.1

6.1.0

6.0.5

6.0.4

6.0.3

6.0.2

6.0.1

6.0.0

5.32.2

5.32.1

5.32.0

5.31.1

5.31.0

5.30.2

5.30.1

5.30.0

5.29.0

5.28.0

5.27.4

5.27.3

5.27.2

5.26.1

5.26.0

5.25.0

5.24.2

5.24.1

5.24.0

5.23.0

5.22.1

5.22.0

5.21.0

5.20.1

5.20.0

5.19.3

5.19.2

5.19.1

5.19.0

5.18.1

5.18.0

5.17.0

5.16.0

5.15.0

5.14.0

5.13.0

5.12.3

5.12.2

5.12.1

5.12.0

5.11.2

5.11.1

5.11.0

5.10.0

5.9.1

5.9.0

5.8.2

5.8.1

5.8.0

5.7.4

5.7.1

5.7.0

5.6.0

5.5.4

5.5.3

5.5.2

5.5.1

5.5.0

5.4.5

5.4.4

5.4.3

5.4.2

5.4.1

5.4.0

5.3.1

5.3.0

5.2.4

5.2.3

5.2.2

5.2.1

5.2.0

5.1.5

5.1.4

5.1.3

5.1.2

5.1.1

5.0.0

4.8.1

4.8.0

4.7.0

4.6.0

4.5.1

4.5.0

4.4.0

4.3.1

4.3.0

4.2.0

4.1.0

4.0.0

3.13.3

3.13.2

3.13.1

3.13.0

3.12.0

3.11.2

3.11.1

3.11.0

3.10.2

3.10.1

3.10.0

3.9.1

3.9.0

3.8.2

3.8.1

3.8.0

3.7.1

3.7.0

3.6.1

3.6.0

3.5.5

3.5.4

3.5.3

3.5.2

3.5.1

3.5.0

3.4.2

3.4.1

3.4

3.3

3.2.2

3.2.1

3.2

3.1.1

3.1

3.0

3.0b1 pre-release

2.5.2.2

2.5.2.1

2.5.2

2.5.1

2.5

2.4.9

2.4.8

2.4.7.1

2.4.7

2.4.6

2.4.5

2.4.4

2.4.3

2.4.2

2.4.1

2.4

2.3

2.2.2

2.2.1

2.2

2.1.1

2.1

2.0

1.2.3

1.2.1

1.2

1.1.4

1.1.3

1.1.2

1.1.1

1.1

1.0.2

1.0.1

1.0

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