The Next Generation of Microbial Variant Calling with Snippy
Project description
Snippy-NG
🚨 Snippy-NG is under construction and should not replace Snippy 🚨
Table of Contents
Installation
snippy is available on PyPI and can be installed using pip (without external dependencies):
pip install snippy-nextgen
The complete snippy-ng environment (including all dependencies) can be installed using the snippy-ng installer script. This script will install the latest version of snippy-ng and all its dependencies.
curl -sSL https://github.com/centre-pathogen-genomics/snippy-ng/releases/latest/download/install.sh | bash -s -- --force
License
snippy-ng is distributed under the terms of the MIT license.
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