sortscore
sortscore is a Python package for Sort-seq variant analysis, including scoring, normalization, and visualization.
Quick Start
python -m venv .venv
source .venv/bin/activate
pip install sortscore
Run a standard variant scoring analysis:
sortscore score -n EXPERIMENT_NAME -e path/to/experiment_setup.csv -c path/to/config.json
If the sortscore command is not on your PATH, run:
python -m sortscore score -n EXPERIMENT_NAME -e path/to/experiment_setup.csv -c path/to/config.json
Example Heatmaps
Single Experiment Scoring Heatmap
Batch Normalization Heatmap
Documentation
Demo
- Single Experiment Scoring Notebook Demo
- Batch Normalization Notebook Demo
- Comparison of Ordinal vs MFI weighted scores
Example Config Files
Integrations
1 maintainer
Metadata
1 maintainer
Release files for sortscore 0.3.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| sortscore-0.3.1.tar.gz | 68.9 kB | With provenance | Details for sortscore-0.3.1.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| sortscore-0.3.1-py3-none-any.whl | Python 3 | none | any | Details for sortscore-0.3.1-py3-none-any.whl |
Total release size: 153.3 kB
Release files / sortscore-0.3.1.tar.gz
| Download URL | sortscore-0.3.1.tar.gz |
|---|---|
| Size | 68.9 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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Transparency logRelease files / sortscore-0.3.1-py3-none-any.whl
| Download URL | sortscore-0.3.1-py3-none-any.whl |
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| Size | 84.5 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Sep 15, 2026.
Transparency logSecurity for sortscore 0.3.1
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
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Attestation for sortscore-0.3.1.tar.gz
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Sep 15, 2026.
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