sortscore
sortscore is a Python package for Sort-seq variant analysis, including scoring, normalization, and visualization.
Quick Start
python -m venv .venv
source .venv/bin/activate
pip install sortscore
Run a standard variant scoring analysis:
sortscore score -n EXPERIMENT_NAME -e path/to/experiment_setup.csv -c path/to/config.json
If the sortscore command is not on your PATH, run:
python -m sortscore score -n EXPERIMENT_NAME -e path/to/experiment_setup.csv -c path/to/config.json
Example Heatmaps
Single Experiment Scoring Heatmap
Batch Normalization Heatmap
Documentation
Demo
- Single Experiment Scoring Notebook Demo
- Batch Normalization Notebook Demo
- Comparison of Ordinal vs MFI weighted scores
Example Config Files
Integrations
1 maintainer
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