SpaMosaic: mosaic integration of spatial multi-omics with GNN and contrastive learning
Reason this release was yanked:
wrong setup dependence
Project description
SpaMosaic
SpaMosaic is a Python package for spatial multi-omics data integration using contrastive learning and graph neural networks. It supports integration of partially overlapping modalities and facilitates downstream analyses such as spatial domain identification and modality imputation.
🔧 Features
- Horizontal integration: integrates multiple slices within a single modality
- Vertical integration: integrates multiple modalities measured from the same slice
- Mosaic integration: integrates multiple slices with overallping modalities
- Imputation: imputes expression profiles of missing omics
🚀 Installation
We recommend using Python 3.8+ and a Conda environment:
pip install spamosaic
📚 Documentation
📖 Full tutorials and API reference: 👉 https://spamosaic.readthedocs.io
📄 License
SpaMosaic is released under the MIT License. © 2025 Jinmiao Lab
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