Geometric inference of cross-species transcriptome correspondence using Gromov–Wasserstein optimal transport.
Project description
Species-OT
Geometric inference of cross-species transcriptome correspondence using Gromov-Wasserstein optimal transport.
Installation
$ pip install speciesot
Requirements
-
Python 3.12.7
-
NVIDIA GPUs or Apple Silicon
Click here to learn how to utilize Apple Silicon's GPUs (official documentation).
Documentation
The tutorial is available here.
Preprint
Please see the following preprint: Y. Tokuta et al. Geometric inference of cross-species transcriptome correspondence using Gromov-Wasserstein optimal transport. bioRxiv
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