Geometric inference of cross-species transcriptome correspondence using Gromov–Wasserstein optimal transport.
Project description
Species-OT
Geometric inference of cross-species transcriptome correspondence using Gromov-Wasserstein optimal transport.
Installation
$ pip install speciesot
Requirements
-
Python3
-
Apple Silicon or NVIDIA GPUs (recommended)
Click here to learn how to utilize Apple Silicon's GPUs (official documentation).
Documentation
The tutorial is available here.
Preprint
Please see the following paper: Y. Tokuta et al. Geometric inference of cross-species transcriptome correspondence using Gromov-Wasserstein optimal transport. bioRxiv
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file speciesot-0.2.3.tar.gz.
File metadata
- Download URL: speciesot-0.2.3.tar.gz
- Upload date:
- Size: 16.5 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: poetry/1.8.3 CPython/3.9.19 Darwin/24.6.0
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
f0854435a6c7e045e82a8484e7f365a91cfb01de7bb5a4e0eddb0391570f3252
|
|
| MD5 |
ed3185f177307f4669e451f45cf1aee3
|
|
| BLAKE2b-256 |
aa6f6d682591483fbfca96b94e021f65a49d49f85f9ddcc43a59e45b5b194e21
|
File details
Details for the file speciesot-0.2.3-py3-none-any.whl.
File metadata
- Download URL: speciesot-0.2.3-py3-none-any.whl
- Upload date:
- Size: 16.6 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: poetry/1.8.3 CPython/3.9.19 Darwin/24.6.0
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
7938bf1f6d80d65ff4caa1a7922ef0ee6e35e6b2279ec099ae8b1517043d9c29
|
|
| MD5 |
6bafd00c9798c430d141eac2baee1919
|
|
| BLAKE2b-256 |
3479bd8ca932ec8bd842cdc078461a75bf18875eb2cbb396105f6856c344bec8
|
