spectral-fit-viewer 0.0.1

Spectral Fit Viewer CLI

spectral-fit-viewer

This repository allows for the interactive display of spectral data to a local browser through utilizing the python library Bokeh within a command line application uniquely suited for Picarro.

For developing

The following instructions are valid for developers who use pip and virtualenv. Developers who prefer to use Conda will have to adapt the Makefile and other scripts to be suitable for that environment.

make develop

To run the SFV, first create a 'configscripts' directory to hold baseline and fit YAML files.

mkdir configscripts 

As well, in the 'test' folder please create a 'logs' directory to hold logs from sessions and an 'rdf_data' directory to place your h5 files.

cd tests
mkdir logs
mkdir rdf_data

Once you have your config scripts and data in the approperate location pip install the SFV through the command

pip install spectral_fit_viewer

and run the SFV with given file pathway by:

spectral_fit_viewer full -f configscripts/fit_script.yaml -b configscripts/baseline.yaml -d test/rdf_data -l test/logs

to get less logs in terminal an option is to run:

export LOLOGGER_SERVERLESS=1