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Python implementation of SWIFT-IR

Project description

spectralign - Spectral methods for aligning image stacks

Introduction

Spectralign is a re-implementation of the SWIFT-IR algorithm by Art Wetzel of the Pittsburgh Supercomputing Center, which was described in Wetzel et al., 2016.

This implementation presents an object-oriented interface to the algorithm and some examples of use are included.

Installation

Spectralign may be obtained by

pip install spectralign

Examples

Development

Development of spectralign is on github.

Acknowledgments

The original algorithm was written in C by Art Wetzel. The most recent version of that project is at github.com/mcellteam/swift-ir. (That repository also includes an earlier version of my Python implementation as well as a GUI that uses it.)

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