Tools to enable structural systems biology
Project description
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## ssbio This Python package provides a collection of tools for people with questions in the realm of structural systems biology. The main goals of this package are to:
Provide an easy way to map proteins to sequences and structures
Directly link structures to genome-scale SBML models
Prepare structures for downstream analyses, such as their use in molecular modeling software
##### Example questions you can answer with this package:
How can I determine the number of protein structures available for my list of genes?
What is the best, representative structure for my protein?
Where, in a metabolic network, do these proteins work?
Where do popular mutations show up on a protein?
How can I compare the structural features of an entire proteome?
and more…
## Documentation Read the documentation [here](http://ssbio.readthedocs.io/en/latest/).
## Quick install Clone this repository to any location and then install it.
Cloning `bash git clone https://github.com/SBRG/ssbio.git `
Installation
First install NGLview: `bash pip install nglview `
Then install ssbio: `bash cd ssbio python setup.py develop --user `
Updating `bash cd ssbio git pull `
Uninstalling `bash pip uninstall ssbio `
### External programs to install See: [Software Installations](https://github.com/SBRG/ssbio/wiki/Software-Installations)
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