StarDist Napari Plugin
This project provides the napari plugin for StarDist, a deep learning based 2D and 3D object detection method with star-convex shapes. The plugin allows to apply pretrained and custom trained models from within napari.
Installation & Usage
Install the plugin with pip install stardist-napari or from within napari via Plugins > Install/Uninstall Package(s)…. If you want GPU-accelerated prediction, please read the more detailed installation instructions for StarDist.
You can activate the plugin in napari via Plugins > StarDist: StarDist. Example images for testing are provided via File > Open Sample > StarDist.
For a more detailed demonstration of the plugin, please watch this short video.
There's no dedicated documentation yet, but the most important parameters are identical to those of our StarDist ImageJ/Fiji plugin, which are documented here.
If you use this plugin for your research, please cite us.
Troubleshooting & Support
- The image.sc forum is the best place to start getting help and support. Make sure to use the tag
stardist, since we are monitoring all questions with this tag. - For general questions about StarDist, it's worth taking a look at the frequently asked questions (FAQ).
- If you have technical questions or found a bug, feel free to open an issue.
2 maintainers
Metadata
2 maintainers
Release files for stardist-napari 2021.6.26
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| stardist-napari-2021.6.26.tar.gz | 30.9 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| stardist_napari-2021.6.26-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 58.9 kB
Release files / stardist-napari-2021.6.26.tar.gz
| Download URL | stardist-napari-2021.6.26.tar.gz |
|---|---|
| Size | 30.9 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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twine/3.2.0 pkginfo/1.6.1 requests/2.24.0 setuptools/49.6.0.post20200814 requests-toolbelt/0.9.1 tqdm/4.60.0 CPython/3.7.7
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Release files / stardist_napari-2021.6.26-py3-none-any.whl
| Download URL | stardist_napari-2021.6.26-py3-none-any.whl |
|---|---|
| Size | 28.0 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.2.0 pkginfo/1.6.1 requests/2.24.0 setuptools/49.6.0.post20200814 requests-toolbelt/0.9.1 tqdm/4.60.0 CPython/3.7.7
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