SubmitCGAP
A file submission tool for CGAP
Description
This is a tool for uploading certain kinds of files to CGAP.
Current support is for submission of new cases, family histories, and gene lists.
Installation
Installing this system involves these steps:
Create, install, and activate a virtual environment.
Only if you are a developer, install poetry and select the source repository. Others will not have a source repository to select, so should skip this step.
If you are an end user, do “pip install submit_cgap”. Otherwise, do “make build”.
Set up a ~/.cgap-keys.json credentials file.
For detailed information about these installation steps, see Installing SubmitCGAP.
Testing
To run unit tests, do:
$ make test
Additional notes on testing these scripts for release can be found in Testing SubmitCGAP.
Getting Started
Once you have finished installing this library into your virtual environment, you should have access to the submit-metadata-bundle and the submit-genelist commands. For more information about how to format files for submission and how to use these commands, see Getting Started.
Release files for submit_cgap 4.2.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| submit_cgap-4.2.0.tar.gz | 81.0 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| submit_cgap-4.2.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 190.6 kB
Release files / submit_cgap-4.2.0.tar.gz
| Download URL | submit_cgap-4.2.0.tar.gz |
|---|---|
| Size | 81.0 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
76d1cfbd3b88f4fad322d55a371499ebbf9e7cd98a4cff07fcc3e6c0c35ddb17
|
|
BLAKE2b-256 checksum How to use checksums |
989f6f9071bb17ca254f47b79bdd2a8ac39bf7deac1d34fbbfd0ec8c8973ff44
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.8.3 CPython/3.11.9 Linux/6.5.0-1022-azure
|
Release files / submit_cgap-4.2.0-py3-none-any.whl
| Download URL | submit_cgap-4.2.0-py3-none-any.whl |
|---|---|
| Size | 109.5 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
740bea9a44e299cf4ce3f8988f97c0dfc73d75720ab8441a11645465d0a208a3
|
|
BLAKE2b-256 checksum How to use checksums |
9ecffacf0623793f026ec013e45b5584b1c79e8b5eb451a6839c6d0a47186a57
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.8.3 CPython/3.11.9 Linux/6.5.0-1022-azure
|
