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  hms_pypi

  Joined on Sep 27, 2016

4 Projects

dcicutils

Last released on Feb 16, 2018

Utility modules shared amongst several repos in the 4dn-dcic organization

Submit4DN

Last released on Jan 17, 2018

Tools for data wrangling and submission to data.4dnucleome.org

pypairix

Last released on Nov 16, 2017

Pypairix is a Python module for fast querying on a pairix-indexed bgzipped text file that contains a pair of genomic coordinates per line. For more information, see: https://github.com/4dn-dcic/pairix/blob/master/README.md.

hic2cool

Last released on Oct 18, 2017

Converter between .hic files (from juicer) and single-resolution or multi-resolution .cool files (for cooler). Both hic and cool files describe Hi-C contact matrices. Intended to be lightweight, this can be used as a simple imported package or a stand-alone Python file for command line conversion.

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