Tibanna runs portable pipelines (in CWL/WDL) on the AWS Cloud.
Tibanna runs portable pipelines (in CWL/WDL/Snakemake/shell) on the AWS Cloud.
pip install tibanna
Use CLI to set up the cloud component and run workflow.
# Deploy Unicorn to the Cloud (Unicorn = serverless scheduler/resource allocator). tibanna deploy_unicorn --usergroup=mygroup # Run CWL/WDL workflow on the Cloud. tibanna run_workflow --input-json=myrun.json
Alternatively, use Python API.
from tibanna.core import API # Deploy Unicorn to the Cloud. API().deploy_unicorn(usergroup='mygroup') # Run CWL/WDL workflow on the Cloud. API().run_workflow(input_json='myrun.json')
0.8.2, Tibanna supports local CWL/WDL files as well as shell commands and Snakemake workflows.
Note2: Python2.7 support is deprecated now (
0.7.0 or after)! Please switch to Python3.6!
0.8.0, one no longer needs to
git clone the Tibanna repo.
- Please switch from
- We also renovated the Python API as an inheritable class to allow development around tibanna.
Note4: Tibanna_4dn (extension of Tibanna) is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna_4dn has moved to its own Github repo since version
Nore5: For more details, see Tibanna Documentation.
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