Tibanna runs portable pipelines (in CWL/WDL) on the AWS Cloud.
Tibanna runs portable pipelines (in CWL/WDL/Snakemake/shell) on the AWS Cloud.
pip install tibanna
Use CLI to set up the cloud component and run workflow.
# Deploy Unicorn to the Cloud (Unicorn = serverless scheduler/resource allocator). tibanna deploy_unicorn --usergroup=mygroup # Run CWL/WDL workflow on the Cloud. tibanna run_workflow --input-json=myrun.json
Alternatively, use Python API.
from tibanna.core import API # Deploy Unicorn to the Cloud. API().deploy_unicorn(usergroup='mygroup') # Run CWL/WDL workflow on the Cloud. API().run_workflow(input_json='myrun.json')
0.8.2, Tibanna supports local CWL/WDL files as well as shell commands and Snakemake workflows.
Note 2: As of Tibanna version
2.0.0, Python 3.6 is no longer supported. Please switch to Python 3.8! Python 3.7 is also supported as a fallback, but please prefer 3.8 if you can.
Note 3: Starting
0.8.0, one no longer needs to
git clone the Tibanna repo.
- Please switch from
- We also renovated the Python API as an inheritable class to allow development around tibanna.
For more details, see Tibanna Documentation.
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