13 projects
foursight-smaht
Serverless Chalice Application for Monitoring
tibanna
Tibanna runs portable pipelines (in CWL/WDL) on the AWS Cloud.
benchmark-4dn
Benchmark functions that returns total space, mem, cpu given input size and parameters for the CWL workflows
qc-parser
Parses outputs of different QC tools and unifies them for the SMaHT portal
foursight-cgap
Serverless Chalice Application for Monitoring
tibanna-ff
Tibanna runs portable pipelines (in CWL/WDL) on the AWS Cloud.
magma-suite
Collection of tools to manage meta-workflows automation.
o2-processing-utils
Runs a variety of bioinformatics tools on O2 (HMS' HPC), such as long read alignment and QC
hic2cool
Converter between hic files (from juicer) and single-resolution or multi-resolution cool files (for cooler). Both hic and cool files describe Hi-C contact matrices. Intended to be lightweight, this can be used as an imported package or a stand-alone Python tool for command line conversion.
cgap-higlass-data
Data file generation for CGAP's Higlass browsers
cgap-pipeline-utils
Repository implementing utilities for deploying pipelines that implement the CGAP-Pipeline specification.
bamsnap
A converter from .bam to .png for specific genomic region.
simple-s3fs
A simple FUSE filesystem for reading files in S3 buckets. Forked from https://github.com/higlass/simple-httpfs and has been adapted to the needs of the 4DN data portal.
