Manipulate vcf files of structural variants using SURVIVOR
Project description
surpyvor
A python wrapper around SURVIVOR, with additional convenience functions.
Installation and dependencies
surpyvor requires bcftools, bgzip, tabix and SURVIVOR to be installed and in the $PATH.
sub-commands:
merge merging vcf files of SVs
highsens get union of SV vcfs
highconf get intersection of SV vcfs
prf calculate precision, recall and F-measure
upset Make upset plot for multiple SV vcf files
Each sub-command has its own help information, accessible by running surpyvor <command> -h/--help
Citation
If you use this tool, please consider citing our publication and the citation for SURVIVOR.
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