Tool for finding cumulative pileups
Project description
Piler
Requirements
Python >= 3.6pysamgffuitls
Installation
pip install tns-piler
Usage
Cumulative Pileups of particular genes
Piler -d [GFFutils formatted annotation] -t [Ensembl transcript ID] -o [Out location] [Indexed bam files]
Output
CSV with cumulative pileups for each position along the gene, no introns, first column is file name
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