Tool for finding cumulative pileups

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License: MIT License

Author: Tim Nicholson-Shaw

Tags Sequencing, Bioinformatics

Requires: Python >=3.6

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Project description

Piler

Requirements

  • Python >= 3.6
  • pysam
  • gffuitls

Installation

pip install tns-piler

Usage

Cumulative Pileups of particular genes

Piler -d [GFFutils formatted annotation] -t [Ensembl transcript ID] -o [Out location] [Indexed bam files]

Output

CSV with cumulative pileups for each position along the gene, no introns, first column is file name

Project details

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Avatar for timnicholsonshaw from gravatar.com timnicholsonshaw

Unverified details

These details have not been verified by PyPI
Project links
GitHub Statistics

View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

Meta

License: MIT License

Author: Tim Nicholson-Shaw

Tags Sequencing, Bioinformatics

Requires: Python >=3.6

Classifiers

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0.0.4

0.0.3

0.0.2

0.0.1

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