Piler
Requirements
Python >= 3.6pysamgffuitls
Installation
pip install tns-piler
Usage
Cumulative Pileups of particular genes
Piler -d [GFFutils formatted annotation] -t [Ensembl transcript ID] -o [Out location] [Indexed bam files]
Output
CSV with cumulative pileups for each position along the gene, no introns, first column is file name
1 maintainer
Metadata
1 maintainer
Release files for tns-piler 0.0.4
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
|---|---|---|---|---|
| tns-piler-0.0.4.tar.gz | 3.6 kB | Without provenance | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| tns_piler-0.0.4-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 7.7 kB
Release files / tns-piler-0.0.4.tar.gz
| Download URL | tns-piler-0.0.4.tar.gz |
|---|---|
| Size | 3.6 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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twine/3.4.2 importlib_metadata/3.10.0 pkginfo/1.7.0 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.62.2 CPython/3.8.8
|
Release files / tns_piler-0.0.4-py3-none-any.whl
| Download URL | tns_piler-0.0.4-py3-none-any.whl |
|---|---|
| Size | 4.1 kB |
| Tags | Python 3 |
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SHA-256 checksum How to use checksums |
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twine/3.4.2 importlib_metadata/3.10.0 pkginfo/1.7.0 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.62.2 CPython/3.8.8
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Security for tns-piler 0.0.4
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