topicpy
Python package for topic modelling pre and post processing
Install
This is available trough pip
pip install topicpy
Modules
This package consists of multiple modules:
- converter: handels gene name conversions
- geneontology: uses GSEA to perform gene ontologies
- gtex: handle GTEx data
- hsbmpy: handle ouput of hierarchical stochastic block model
- hypergeom: perform hypergeometric tests
- lda: Run sklearn LatenDirichletAllocation with some more parameters
- tableanalyser: study distributions of a RNA-Seq data
- TCGA_files: handle TCGA metadata
Documentation
https://topicpy.readthedocs.io/en/latest/
Test
Run unittest with
python test/test.py
License
See LICENSE
1 maintainer
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