Package to extract information from topic models.
Project description
topicpy
Python package for topic modelling pre and post processing
Install
This is available trough pip
pip install topicpy
Modules
This package consists of multiple modules:
- converter: handels gene name conversions
- geneontology: uses GSEA to perform gene ontologies
- gtex: handle GTEx data
- hsbmpy: handle ouput of hierarchical stochastic block model
- hypergeom: perform hypergeometric tests
- lda: Run sklearn LatenDirichletAllocation with some more parameters
- tableanalyser: study distributions of a RNA-Seq data
- TCGA_files: handle TCGA metadata
Documentation
https://topicpy.readthedocs.io/en/latest/
Test
Run unittest with
python test/test.py
License
See LICENSE
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