Pythonic wrapper for the Kappa language (bio simulations)
Topkappy is a Python library built on top kappy to use the Kappa language (for simulation of biological complexation processes) in a pythonic way, using Python objects to define agents and rules, and with some methods for plotting complexes and time series.
pip install topkappy
License: MIT, Copyright Edinburgh Genome Foundry
More biology software
Topkappy is part of the EGF Codons synthetic biology software suite for DNA design, manufacturing and validation.