ua-clarity-api 1.1.4

API that interacts with Illumina Clarity LIMS REST architecture.

UA-Clarity-API

Provides a simple REST implementation for use with Clarity endpoints.

Motivation

Was designed to implement a simple way to interact with Clarity REST architecture.

Features

• Get will do a batch get if that end point exists, otherwise it will return a response similar to what a batch get returns.
• Caller can add queries to get using a keyword.
• Caches every get to eliminate excessive get calls.
• All REST calls will throw an exception if they failed.

Code Example

from ua_clarity_api import ua_clarity_api


api = ua_clarity_api.ClarityApi(host, username, password)
uris_files = api.download_files("some file uri")
data = api.get("some endpoint")

Installation

pip install ua-clarity-api

Tests

pip install --update nose
cd ./repo
cd ./tests
nosetests test_ua_clarity_api.py

How to Use

• You'll need to instantiate a ClarityApi object with a correct host, and the username/password to access that host's endpoints.
• Get can retrieve resources from endpoints and can utilize queries with the "parameters" keyword.
• Put and Post can update or create new resources given the appropriate endpoint and a well-formed payload.
• Delete can remove a resource from an endpoint.
• Download_files will create temporary files from a list of file uris and returns them as a dictionary mapping of uri: tempfile.

Credits

sterns1 raflopjr RyanJohannesBland

License

MIT