UniPDB Residue Mapper

UniPDB Mapper is a Python package designed for identifier (ID) and residue mapping between UniProt and PDB databases.

Getting Started

• 🚀 Installation
• 💲 Command line examples
• 🐍 Usage in Python script
• 📖 Read the documentation

Installation

$ pip install unipdb_mapper

Usage

This package can be used either in any of the Python scripts or via the terminal.

Usage via Terminal

1. Getting help

$ unipdb -h

2. ID Mapping from UniProt to PDB

$ unipdb idmapper -u P19339

3. ID Mapping from PDB to UniProt

$ unipdb idmapper -p 1B7F

4. Residue Mapping from UniProt to PDB

$ unipdb resmapper -u P19339 -n 222

3. Residue Mapping from PDB to UniProt

$ unipdb resmapper -p 1B7F -n 222

Questions and Bugs

If you encounter any bugs or have questions about using the software, please don’t hesitate to open an issue on GitHub. Bug reports and suggestions are an important part of making UniPDB Mapper more stable and user-friendly. Your feedback plays a vital role in improving the project.

News

If you like/use this repository, don't forget to give a star 🌟.

Some exciting updates including detailed examples are planned so stay tuned!!

Acknowledgements

This Project uses APIs provided by PDBe and extracts information integrated by SIFTS.