unipdb_mapper 0.0.1

Python Package for residue mapping between UniProt and PDB entries.

UniPDB Residue Mapper

This package maps residue numbering from UniProt/PDB to PDB/UniProt.

Install

pip install unipdb_mapper

Usage

This package can be used either in any of the Python scripts or via the terminal.

Usage via Python Script

1. Importing within a Python script

from unipdb_mapper import ResiduesMapper

2. Residue Mapping from UniProt to PDB

M = ResiduesMapper('P19339', [122, 145], 'UniProt')
MAP = M.resmapper_unp2pdb()
print(MAP)

3. Residue Mapping from PDB to UniProt

M = ResiduesMapper('1b7f', [123, 145], 'PDB')
MAP = M.resmapper_pdb2unp()
print(MAP)

4. Save results to a file

OUTFILE = M.output_writer('output.csv', MAP)

Usage via Terminal

1. Getting help

$ unipdb -h

2. Residue Mapping from UniProt to PDB

$ unipdb -u P19339 -n 122 123 156 -o output.csv

3. Residue Mapping from PDB to UniProt

$ unipdb -p 1b7f -n 122 123 156 -o abc.csv

News

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Some exciting updates including examples are planned so stay tuned!!