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A toolkit for visualizing VCF metadata.

Project description

# vcfViewer A toolkit for visualizing variant call format (VCF) file data.

Developed by Tom Sasani for MDCRC 6521 at the University of Utah.

## About

vcfViewer is a basic toolkit that allows users to create useful visualizations of VCF metadata in [bokeh]( For example, users can plot quality scores,

## Usage

To visually determine which variants in a VCF meet a quality score threshold, simply run:

python [vcf] [threshold]

## Dependencies


To install, run conda install bokeh.


To install, run pip install cyvcf2.

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