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A toolkit for visualizing VCF metadata.

Project description

# vcfViewer A toolkit for visualizing variant call format (VCF) file data.

Developed by Tom Sasani for MDCRC 6521 at the University of Utah.

## About

vcfViewer is a basic toolkit that allows users to create useful visualizations of VCF metadata in [bokeh](http://bokeh.pydata.org/en/latest/). For example, users can plot quality scores,

## Usage

To visually determine which variants in a VCF meet a quality score threshold, simply run:

python plot_qual.py [vcf] [threshold]

## Dependencies

bokeh

To install, run conda install bokeh.

cyvcf2

To install, run pip install cyvcf2.

Project details


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Filename, size & hash SHA256 hash help File type Python version Upload date
vcfViewer-0.1-py3-none-any.whl (4.5 kB) Copy SHA256 hash SHA256 Wheel py3 Apr 7, 2016
vcfViewer-0.1.tar.gz (3.8 kB) Copy SHA256 hash SHA256 Source None Apr 7, 2016

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