A toolkit for visualizing VCF metadata.
Project description
# vcfViewer A toolkit for visualizing variant call format (VCF) file data.
Developed by Tom Sasani for MDCRC 6521 at the University of Utah.
## About
vcfViewer is a basic toolkit that allows users to create useful visualizations of VCF metadata in [bokeh](http://bokeh.pydata.org/en/latest/). For example, users can plot quality scores,
## Usage
To visually determine which variants in a VCF meet a quality score threshold, simply run:
python plot_qual.py [vcf] [threshold]
## Dependencies
bokeh
To install, run conda install bokeh.
cyvcf2
To install, run pip install cyvcf2.
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