VeryFastTree Python Bindings
The VeryFastTree Python Bindings provide an interface to the VeryFastTree software for rapid construction of phylogenetic trees. This package allows you to easily integrate VeryFastTree into your Python workflows, enabling efficient handling of large datasets and quick tree generation.
Installation
To install the VeryFastTree Python Bindings, you can use pip:
pip install veryfasttree
*The Linux version requires the OpenMP library (libgomp) to be installed on the system.
Usage
Here is a basic example of how to use the VeryFastTree Python Bindings:
import veryfasttree
# Define input file
input_alignment = 'path/to/your/alignment.fasta'
# Run VeryFastTree
tree = veryfasttree.run(input_alignment, gtr=True, nt=True)
print(tree)
The input to the function can be a file or a text string containing the aligned sequences. The other function arguments are the same as the VeryFastTree command-line arguments, omitting the hyphens (-). Flags should be specified with the value True.
VeryFastTree can also be called using the command line interface provided by the Python module:
python3 -m veryfasttree [arguments]
The command-line arguments follow the same convention as the VeryFastTree.
Contributing
Contributions are welcome! Please submit pull requests or issues on the GitHub repository.
1 maintainer
Metadata
1 maintainer
Release files for veryfasttree 4.0.4.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| veryfasttree-4.0.4.1.tar.gz | 3.4 MB | Without provenance | Details for veryfasttree-4.0.4.1.tar.gz |
Built distributions (wheels)
Total release size: 28.2 MB
Release files / veryfasttree-4.0.4.1.tar.gz
| Download URL | veryfasttree-4.0.4.1.tar.gz |
|---|---|
| Size | 3.4 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
3f6df5412d247565eefae018b5db398716a5296b1b36021507958a2fed965603
|
|
BLAKE2b-256 checksum How to use checksums |
9af6d8d28239b9723623bd14a080bce981ccd4e57a7ba1c05ce05042ab42b633
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.8.3 CPython/3.12.4 Windows/11
|
Release files / veryfasttree-4.0.4.1-py38-none-win_amd64.whl
| Download URL | veryfasttree-4.0.4.1-py38-none-win_amd64.whl |
|---|---|
| Size | 3.4 MB |
| Tags | Python 3.8 Windows x86-64 |
|
SHA-256 checksum How to use checksums |
f9b1fb7d80106db8fb84cf572d72ac75aa9312dc750ba379245ee82b800af380
|
|
BLAKE2b-256 checksum How to use checksums |
827c4fa400e8377aa2171b4c435c4f969b514a6c78697d733d455896bd609bc5
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.8.3 CPython/3.12.4 Windows/11
|
Release files / veryfasttree-4.0.4.1-py38-none-musllinux_1_2_x86_64.whl
| Download URL | veryfasttree-4.0.4.1-py38-none-musllinux_1_2_x86_64.whl |
|---|---|
| Size | 5.8 MB |
| Tags | Linux musl 1.2+ x86-64 Python 3.8 |
|
SHA-256 checksum How to use checksums |
7f44657f74e10c22af8617d155b2c18338e9c40c981d3f3519e7b6aa6f5ff6d1
|
|
BLAKE2b-256 checksum How to use checksums |
7a863042da9c89b2556151eb71f5f6f4fabb92f258eedc22828621368ee8c2d5
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.8.3 CPython/3.12.4 Windows/11
|
Release files / veryfasttree-4.0.4.1-py38-none-musllinux_1_2_ppc64le.whl
| Download URL | veryfasttree-4.0.4.1-py38-none-musllinux_1_2_ppc64le.whl |
|---|---|
| Size | 984.3 kB |
| Tags | Linux musl 1.2+ PowerPC 64-le Python 3.8 |
|
SHA-256 checksum How to use checksums |
aa3c7896a23981b2d8c6d7ba308c8831e96cdd7ecec432422ea59327dc89ead7
|
|
BLAKE2b-256 checksum How to use checksums |
7c41d441bd02b55b06698d60e774877ba8b5d6546c1007a0a79809fe83d836c9
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.8.3 CPython/3.12.4 Windows/11
|
Release files / veryfasttree-4.0.4.1-py38-none-musllinux_1_2_aarch64.whl
| Download URL | veryfasttree-4.0.4.1-py38-none-musllinux_1_2_aarch64.whl |
|---|---|
| Size | 815.6 kB |
| Tags | Linux musl 1.2+ ARM64 Python 3.8 |
|
SHA-256 checksum How to use checksums |
a72cce29932047919e30e40880250c2a6c2d0633bbe361df91c57511c800d338
|
|
BLAKE2b-256 checksum How to use checksums |
7f4f0325bba38e5a64fa3c304944e6bbcf785277ccba26bf5d92498a24e6b0f8
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.8.3 CPython/3.12.4 Windows/11
|
Release files / veryfasttree-4.0.4.1-py38-none-manylinux_2_17_x86_64.whl
| Download URL | veryfasttree-4.0.4.1-py38-none-manylinux_2_17_x86_64.whl |
|---|---|
| Size | 5.8 MB |
| Tags | Linux glibc 2.17+ x86-64 Python 3.8 |
|
SHA-256 checksum How to use checksums |
78d40f3c2c5ea1c1b0cabeb8b58d1f4c996456d616c8c68bc833991025d6e748
|
|
BLAKE2b-256 checksum How to use checksums |
a5f0bf4577a1da0b9b26d05e6a0e63ba463474ae0920a3aed7b87647e91fafe4
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.8.3 CPython/3.12.4 Windows/11
|
Release files / veryfasttree-4.0.4.1-py38-none-manylinux_2_17_ppc64le.whl
| Download URL | veryfasttree-4.0.4.1-py38-none-manylinux_2_17_ppc64le.whl |
|---|---|
| Size | 974.2 kB |
| Tags | Linux glibc 2.17+ PowerPC 64-le Python 3.8 |
|
SHA-256 checksum How to use checksums |
0cd0766c2f8e0ec23463737a5cd4f166bd124cbdd9a7937875a58e997686e0c8
|
|
BLAKE2b-256 checksum How to use checksums |
d5c23e4ca5f369830edf0164129ce76267860fbf7169bd2e8a984cbfce302aa0
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.8.3 CPython/3.12.4 Windows/11
|
Release files / veryfasttree-4.0.4.1-py38-none-manylinux_2_17_aarch64.whl
| Download URL | veryfasttree-4.0.4.1-py38-none-manylinux_2_17_aarch64.whl |
|---|---|
| Size | 845.2 kB |
| Tags | Linux glibc 2.17+ ARM64 Python 3.8 |
|
SHA-256 checksum How to use checksums |
028119be10b3ba0d872473b5f8e5ac65bd81ba4b401f4b82cd404c474d1c97f3
|
|
BLAKE2b-256 checksum How to use checksums |
e7515a73965f8e03727f4af92374e3421aefb232bd387f3f8d546199e0ffcff0
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.8.3 CPython/3.12.4 Windows/11
|
Release files / veryfasttree-4.0.4.1-py38-none-macosx_13_0_x86_64.whl
| Download URL | veryfasttree-4.0.4.1-py38-none-macosx_13_0_x86_64.whl |
|---|---|
| Size | 6.1 MB |
| Tags | Python 3.8 macOS 13.0+ x86-64 |
|
SHA-256 checksum How to use checksums |
f192c625c063d57cca0651b23ecc45fcd83f259d6ceb95c07d0693de93b0b7f5
|
|
BLAKE2b-256 checksum How to use checksums |
605b40f3ad76cfe2515ab26a0e8c33f6fec6e75be6014f1d6e22c74ebb8733f4
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.8.3 CPython/3.12.4 Windows/11
|
Security for veryfasttree 4.0.4.1
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
No provenance found
None of the files in this release were uploaded with provenance metadata.
A note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
To learn more about protecting yourself from malicious actors, visit our package security documentation.
