VIVOHarvester

Installation

pip install VIVOHarvester

or

git clone git@github.com:VTUL/VIVOHarvester.git
python setup.py install

Usage:

• Harvest data from Elements (Default)

vivotool -f local.yml -t harvest -d 0

• Harvest data from Elements a day ago (Current time -1 day)

vivotool -f local.yml -t harvest -d 1

• Import RDF data into a VIVO instance

vivotool -f local.yml -t ingest

• Fetch user_map.csv

vivotool -f local.yml -t getuser

or

vivotool -f local.yml -t getuser -o yourpath/yourfilename

Database creation

• Create require database

vivotool -f local.yml -t db

Upgrade to newer version

pip uninstall VIVOHarvester
pip install VIVOHarvester==0.1.2 (e.g.)

Testing

py.test --cov=vivotool test/
coverage report -m
coverage report