Visualize (multiple) sequence alignment (MSA)
Project description
Plot overview of Multiple Sequence Alignments (MSA)
Usage:
###################################### # vizqes ###################################### usage: vizqes -f multifasta alignment options: -f, --fasta=FILE multifasta alignment (eg. "align.fas") [ -o, --outfile=STR output file (png, eps, jpg) ] [ -c, --colorscheme=STR STR in ("default", "clustal", "lesk", "cinema", "maeditor", "dna", "aacid") ] [ -x, --boxwidth=INT draw INT pixels per residue (x direction) ] [ -y, --boxheight=INT draw INT pixels per residue (y direction) ] adding identifiers: [ -s, --show_names also draw sequence ids ] [ -g, --show_grouping] draw colors for match, mismatch, gap, and gapped matches (ignores colorscheme) ] [ -F, --font_file=FONT path to truetype font (monospace fonts recommended) ]
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