Tools for EEG, ECoG, iEEG, especially for sleep
Project description
Package to analysis EEG, ECoG and other electrophysiology formats. It allows for visualization of the results and for a GUI that can be used to score sleep stages.
Features
Can read files of format:
Axon (.abf)
Blackrock (.nev, .ns2, .ns3, .ns5)
BCI2000 (.dat)
European Data Format (.edf)
EGI MFF (.mff)
Fieldtrip (.mat)
mne FIFF (.fiff)
Interface for Sleep Scoring
Computes frequency analysis (spectrogram), time-frequency analysis (Morlet wavelet)
Pure Python
Installation
Install phypno by running:
pip install wonambi
If you want to scroll recordings and do some sleep scoring (requires PyQt5)
wonambi
Run it!
From the command line, simply type:
wonambi
To open a dataset directly, add the full path to the file you want to open:
wonambi /home/me/sleep_recordings.edf
Documentation
See Documentation
Change Log
See Change Log
Requirements
Python 3.6
numpy
scipy
PyQt5 (optional for sleep scoring GUI)
nibabel (optional to read freesurfer)
mne (optional to compute multitaper)
Status
License
The project is licensed under the GPLv3 license. Other licenses available upon request.
Project details
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