xiFDR: A tool for FDR analysis in cross-linking mass spectrometry
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xiFDR is a tool for crosslink mass spectrometry (CLMS) false discovery rate (FDR) estimation and crosslink spectrum match (CSM) aggregation. Usual applications are the extraction of residue links or protein-protein interactions (PPIs) above a desired significance threshold. Further, xiFDR supports boosting of FDR levels to obtain the largest possible number of residue-links or PPIs by finding the optimal FDR thresholds.
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Documentation can be found under https://xifdr-py.readthedocs.io/
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