Machine learning model that predicts RNA-seq coverage from DNA
Project description
Yorzoi: RNA-seq coverage prediction from DNA sequence
yorzoi is a deep neural network that predicts RNA-seq coverage from DNA sequence in Yeast (S. Cerevisiae). It is available via PyPI and Huggingface (see installation).
Installation
- You will need an NVIDIA GPU to run Clex.
- Clex requires FlashAttention to be installed: https://github.com/Dao-AILab/flash-attention. We recommend downloading a pre-built wheel suitable for your GPU.
pip install yorzoi
Quick Start: Make a prediction
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
yorzoi-0.0.2.tar.gz
(14.8 kB
view details)
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file yorzoi-0.0.2.tar.gz.
File metadata
- Download URL: yorzoi-0.0.2.tar.gz
- Upload date:
- Size: 14.8 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.1.0 CPython/3.9.19
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
81a718167f5d960261dc066028f9c12e5c5f5c949756584d5bb5384dc751160c
|
|
| MD5 |
cf37542f379f37c77ef07c988e2a6ea6
|
|
| BLAKE2b-256 |
526690ec7733d2cb25033b77dc94f5d1ad68b27870f32e17d9b72b092504218e
|
File details
Details for the file yorzoi-0.0.2-py3-none-any.whl.
File metadata
- Download URL: yorzoi-0.0.2-py3-none-any.whl
- Upload date:
- Size: 2.4 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.1.0 CPython/3.9.19
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
6a149f82dc5398b1bfd25fa5a99ce61ed1a331be058dd0e60a29c3bd872d9def
|
|
| MD5 |
8b68c75e82021bfc8b9e78bdae9744da
|
|
| BLAKE2b-256 |
4db8d361491811f4f01ec22979edb35a2182515eca13f6131f4933e402c2af6c
|
