Machine learning model that predicts RNA-seq coverage from DNA
Project description
Yorzoi: RNA-seq coverage prediction from DNA sequence
yorzoi is a deep neural network that predicts RNA-seq coverage from DNA sequence in Yeast (S. Cerevisiae). It is available via PyPI and Huggingface (see installation).
Installation
- You will need an NVIDIA GPU to run Clex.
- Create a new virtual environment (e.g.:
python -m venv .venv) and activate it (e.g.source .venv/bin/activate) - Clex requires FlashAttention to be installed: https://github.com/Dao-AILab/flash-attention. We recommend downloading a pre-built wheel suitable for your GPU.
pip install yorzoi
Quick Start: Make a prediction
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