zenodo-release-drift 0.0.1

Detect drift between GitHub releases and Zenodo archives

zenodo-release-drift

Detect drift between GitHub releases and Zenodo archives.

When a repository is connected to Zenodo via the GitHub–Zenodo webhook, every new release should be automatically archived. In practice the webhook silently fails, gets disabled, or simply falls behind. zenodo-release-drift surfaces those gaps so you can act on them.

Installation

pip install zenodo-release-drift
# or with uv
uv add zenodo-release-drift

Quick start

Check a single repository:

zenodo-release-drift check owner/repo

Scan every repository owned by a GitHub user or org:

zenodo-release-drift check cytomining

Example output:

GitHub user or org: cytomining
28 repos found, 5 with Zenodo integration.

Repository                Code    Description              Details
------------------------  ------  -----------------------  -------------------------------------------
cytomining/CytoTable      ZRD001  Release(s) not archived  15 release(s) not archived:
                                                           1.2.0, 1.1.4, 1.0.1, ...
cytomining/CytoTable      ZRD002  Zenodo out of date       Zenodo latest: 1.1.3  |  GitHub latest: 1.2.0

Exit code is 1 when drift is found (single-repo mode), 0 when clean — suitable for CI and pre-commit hooks.

Commands

check

zenodo-release-drift check [OPTIONS] TARGET

TARGET is either owner/repo (single repository) or a GitHub username/org (scans all owned repositories).

Option	Description
--json	Output findings as JSON
--markdown	Output as a Markdown table (single repo only)
--explain	Full human-readable explanation of each finding (single repo only)

lint

Explicit single-repository check — useful in pre-commit hooks where the command name should be unambiguous.

zenodo-release-drift lint [OPTIONS] OWNER/REPO

Same options as check.

fix

Upload releases that are missing from Zenodo back to the archive.

zenodo-release-drift fix [OPTIONS] OWNER/REPO

Requires a ZENODO_TOKEN environment variable — a personal access token created at https://zenodo.org/account/settings/applications/.

Option	Description
--version	Upload only this specific version (default: all missing ones)
--from	Only upload versions at or above this semver (inclusive)
--to	Only upload versions at or below this semver (inclusive)
--sandbox	Target sandbox.zenodo.org instead of production
--json	Output results as JSON

How versions are grouped: if Zenodo already holds records for the repository, each upload is created as a new version under the same concept DOI so all versions remain linked. If no existing records are found, a new concept is created.

Note on uploaded source content: the archive uploaded for each version is fetched from GitHub's tag archive endpoint at the moment fix runs, and reflects where the tag points at that time. For the vast majority of repositories this is identical to the original release — tags are not normally moved after publishing. If a tag has been amended since the original release was made, the archive will reflect the current state of the tag rather than its historical state; this is a property of how git tags work rather than a limitation of this tool.

Important — record ownership

The ZENODO_TOKEN you supply must belong to the same Zenodo account that owns the existing records. When the original records were created by the GitHub–Zenodo webhook they are owned by whichever Zenodo account connected the webhook — not necessarily yours. If your token belongs to a different account the newversion API call will return HTTP 403 and the upload will fail with a clear hint message.

To resolve a 403:

1. Log in to Zenodo as the record owner.
2. Open the existing record and go to Edit → Share.
3. Grant your account the Curator role, or ask the Zenodo support team to transfer ownership.
4. Re-run fix once access is granted.

# Upload every missing release
export ZENODO_TOKEN=your-token-here
zenodo-release-drift fix owner/repo

# Upload a single specific release
zenodo-release-drift fix owner/repo --version 1.2.3

# Upload all missing releases from 1.0.0 onwards
zenodo-release-drift fix owner/repo --from 1.0.0

# Upload all missing releases up to and including 1.4.0
zenodo-release-drift fix owner/repo --to 1.4.0

# Upload missing releases within a range
zenodo-release-drift fix owner/repo --from 1.0.0 --to 1.4.0

# Test against the Zenodo sandbox before touching production
export ZENODO_TOKEN=your-sandbox-token-here
zenodo-release-drift fix owner/repo --sandbox

version

zenodo-release-drift version

Check codes

Code	Description
ZRD001	A GitHub release exists with no matching Zenodo archive
ZRD002	The latest Zenodo version is behind the latest GitHub release

Authentication

GitHub (GITHUB_TOKEN)

By default the tool makes unauthenticated GitHub API calls (60 requests/hour limit). Set GITHUB_TOKEN to raise this to 5,000 requests/hour:

export GITHUB_TOKEN=ghp_...
zenodo-release-drift check my-org

Zenodo (ZENODO_TOKEN)

The fix command requires a Zenodo personal access token with the deposit:write scope.

1. Log in to https://zenodo.org (or https://sandbox.zenodo.org for testing).
2. Go to Account → Applications → Personal access tokens.
3. Create a token with the deposit:write scope.
4. Export it before running fix:

export ZENODO_TOKEN=your-token-here
zenodo-release-drift fix owner/repo

Pre-commit hook

Add to .pre-commit-config.yaml to gate commits on a single repository. Set args to the repository you want to check:

- repo: local
  hooks:
    - id: zenodo-release-drift
      name: Zenodo release drift
      entry: zenodo-release-drift lint
      args: ["owner/repo"]
      language: python
      pass_filenames: false
      always_run: true

Python API

from zenodo_release_drift import lint_repo, lint_repo_explain

# Returns a list of finding dicts
findings = lint_repo("owner", "repo")

# Returns a Markdown string with explanations
report = lint_repo_explain("owner", "repo")

Development

git clone https://github.com/d33bs/zenodo-release-drift
cd zenodo-release-drift
uv sync --all-groups
uv run poe pipeline   # pre-commit + tests