21 projects
almanack
An open-source handbook of applied guidance and tools for sustainable software development and maintenance.
pycytominer
Python package for processing image-based profiling data
zarr-lint
Inspect Zarr stores for structural and metadata problems.
cytotable
Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
cytodataframe
An in-memory data analysis format for single-cell profiles alongside their corresponding images and segmentation masks.
arrow-lint
A fast, opinionated, extensible linter for Apache Arrow datasets and related formats.
cosmicqc
coSMicQC is a software tool for single-cell quality control of morphology datasets.
ome-arrow
Using OME specifications with Apache Arrow for fast, queryable, and language agnostic bioimage data.
zenodo-release-drift
Detect drift between GitHub releases and Zenodo archives
napari-ome-arrow
A Napari plugin for OME-Arrow and OME-Parquet bioimage data
onesentence
A Pre-commit hook for 'one sentence per line' documentation practices.
ome-iris
Open bioimage dataset catalog for benchmarking image IO, transformations, metadata management, and bioimage-linked workflows.
scitrail
Analyze scientific literature with structured criteria to reveal the current state of research.
ollama-serve
A Python package that ensures the Ollama server is running and ready with the models your project expects.
nviz
A tool for creating and visualizing n-dimensional microscopy images.
manubot-ai-editor
A Manubot plugin to revise a manuscript using GPT-3
cytominer-database
None
manubot
"Python utilities for Manubot: Manuscripts, open and automated"
sqlite-clean
A SQLite data validation and cleanup tool.
zoom-client
Zoom (Video Communications) API Client
osc-client
A Python client for OpenStreetCam.org (OSC) API utilization.
