15 projects
mbo_utilities
Various utilities for the Miller Brain Observatory
isoview
Multi-view light sheet microscopy image processing pipeline
lbm_suite2p_python
Light Beads Microscopy Pipeline using Suite2p
dotfiles-cli
CLI tool to sync and manage dotfiles across machines
mbo_suite3d
Fast, volumetric cell detection. In development.
mbo-fastplotlib
Next-gen fast plotting library running on WGPU using the Pygfx rendering engine
suite2p_mbo
Pipeline for calcium imaging
pyklb
Python wrapper for the Keller Lab Block (KLB) file format - high-performance storage for 5D microscopy images
mbo-fpl
Next-gen fast plotting library running on WGPU using the Pygfx rendering engine
lbm-mc
High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
lbm-caiman-python
Light Beads Microscopy 2P Calcium Imaging Pipeline.
metricspace
A python translation of code originally theorized in: Metric-space analysis of spike trains: theory, algorithms, and application Jonathan D. Victor and Keith Purpura Network 8, 127-164 (1997)
rs-distances
A Python module implemented in Rust for efficient calculations
canalysis
Calcium Imaging trace analysis with statistics and machine learning.
web-graph-testing
Testing some web/graphical applications and interfaces.
