A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
Efficient calculation of phylogenetic distance matrices.
Magna is a collection of commands that I frequently use in bioinformatics and day-to-day life.
Chiton provides a Python wrapper to commonly used bioinformatics programs.
Assigns taxonomic ranks based on evolutionary divergence.
A toolbox for validating the GTDB taxonomy.
A wrapper to the FastANI program.
Package for common tasks in bioinformatics.
Visualisation of polyphyletic groups between phylogenetic trees to a reference tree.
A toolbox for working with genome trees.
For tracking the relationship between group membership changes across versions.