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A toolbox for validating the GTDB taxonomy.

Project description

GTDB Validation Toolkit

version status ace-internal Downloads Downloads

This toolkit provides functionality for validation the GTDB Taxonomy. It is primarily intended to be used by the GTDB curation team, but has been made available in case others find it useful.


The simplest way to install this package is through pip:

sudo pip install gtdb_validation_tk

Package updates


python3 sdist wheel
python3 -m twine upload dist/*


  1. Clone the repository on a CentOS server.
  2. Create a new meta.yaml, similar to previous versions (adding any new dependencies, the version number, and the SHA256 hash from
  3. Build and upload the package according to the instructions in ace-conda.
  4. Update the server modulefiles according to the ACE wiki


If you find this package useful, please cite this git repository (


Copyright © 2019 Donovan Parks. See LICENSE for further details.

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