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dparks

  Joined on Oct 22, 2013

16 Projects

biolib

Last released on Oct 5, 2017

Package for common tasks in bioinformatic.

checkm-genome

Last released on Nov 9, 2017

Assess the quality of putative genome bins.

cleanm

Last released on Mar 4, 2015

A toolbox for improving population genomes.

comparem

Last released on Aug 21, 2017

A toolbox for comparative genomics.

dbb

Last released on May 9, 2015

Bin scaffolds into population genomes.

drawm

Last released on Jan 12, 2017

A toolkit for creating publication-quality images of phylogenetic trees.

GenomeTk

Last released on Apr 24, 2016

A toolbox for working with genomes.

GenomeTreeTk

Last released on Jan 19, 2017

A toolbox for working with genome trees.

gtdbtk

Last released on Aug 22, 2017

A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

linkm

Last released on Mar 4, 2015

Finds links between 16S reads and assembled contigs.

phylorank

Last released on Dec 16, 2016

Assigns taxonomic ranks based on evolutionary divergence.

refinem

Last released on Oct 5, 2017

A toolbox for improving population genomes.

seqpy

Last released on Feb 3, 2014

seqpy

STAMP

Last released on Jun 26, 2015

A graphical software package for analyzing taxonomic and functional profiles.

unitem

Last released on Aug 21, 2017

Ensemble binning strategies for combining the output of multiple binning methods.

viewm

Last released on Sep 22, 2017

Visualization of functional modules to aid biological interpretation of genomes.

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