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Username    dparks
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18 projects

gtdbtk

Last released on

A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

phylorank

Last released on

Assigns taxonomic ranks based on evolutionary divergence.

checkm-genome

Last released on

Assess the quality of putative genome bins.

gtdb-validation-tk

Last released on

A toolbox for validating the GTDB taxonomy.

biolib

Last released on

Package for common tasks in bioinformatic.

GenomeTreeTk

Last released on

A toolbox for working with genome trees.

gtdb-species-clusters

Last released on

This toolkit provides functionality for establishing, updating, and validating the species clusters used in the Genome Taxonomy Database.

GenomeTk

Last released on

A toolbox for working with genomes.

refinem

Last released on

A toolbox for improving population genomes.

comparem

Last released on

A toolbox for comparative genomics.

unitem

Last released on

Ensemble binning strategies for combining the output of multiple binning methods.

viewm

Last released on

Visualization of functional modules to aid biological interpretation of genomes.

drawm

Last released on

A toolkit for creating publication-quality images of phylogenetic trees.

STAMP

Last released on

A graphical software package for analyzing taxonomic and functional profiles.

dbb

Last released on

Bin scaffolds into population genomes.

cleanm

Last released on

A toolbox for improving population genomes.

linkm

Last released on

Finds links between 16S reads and assembled contigs.

seqpy

Last released on

seqpy

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