gtdbtk

Last released Jul 5, 2023

A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

unitem

Last released Apr 24, 2023

Ensemble binning strategies for combining the output of multiple binning methods.

checkm-genome

Last released Oct 31, 2022

Assess the quality of putative genome bins.

phylorank

Last released Mar 28, 2022

Assigns taxonomic ranks based on evolutionary divergence.

gtdb-validation-tk

Last released Mar 8, 2022

A toolbox for validating the GTDB taxonomy.

biolib

Last released Mar 3, 2021

Package for common tasks in bioinformatics.

ani-cache

Last released Jan 31, 2021

Cache-aware ANI calculations.

comparem

Last released Dec 31, 2020

A toolbox for comparative genomics.

refinem

Last released Nov 12, 2020

A toolbox for improving population genomes.

GenomeTreeTk

Last released Apr 21, 2020

A toolbox for working with genome trees.

gtdb-species-clusters

Last released Mar 16, 2020

This toolkit provides functionality for establishing, updating, and validating the species clusters used in the Genome Taxonomy Database.

GenomeTk

Last released Mar 13, 2020

A toolbox for working with genomes.

viewm

Last released Sep 22, 2017

Visualization of functional modules to aid biological interpretation of genomes.

drawm

Last released Jan 12, 2017

A toolkit for creating publication-quality images of phylogenetic trees.

STAMP

Last released Jun 26, 2015

A graphical software package for analyzing taxonomic and functional profiles.

dbb

Last released May 9, 2015

Bin scaffolds into population genomes.

cleanm

Last released Mar 4, 2015

A toolbox for improving population genomes.

linkm

Last released Mar 4, 2015

Finds links between 16S reads and assembled contigs.

seqpy

Last released Feb 3, 2014

seqpy