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  dparks

  Joined on Oct 22, 2013

16 projects

gtdbtk

Last released on Apr 19, 2018

A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

unitem

Last released on Apr 16, 2018

Ensemble binning strategies for combining the output of multiple binning methods.

phylorank

Last released on Apr 12, 2018

Assigns taxonomic ranks based on evolutionary divergence.

refinem

Last released on Feb 2, 2018

A toolbox for improving population genomes.

biolib

Last released on Feb 1, 2018

Package for common tasks in bioinformatic.

checkm-genome

Last released on Jan 3, 2018

Assess the quality of putative genome bins.

GenomeTreeTk

Last released on Nov 28, 2017

A toolbox for working with genome trees.

viewm

Last released on Sep 22, 2017

Visualization of functional modules to aid biological interpretation of genomes.

comparem

Last released on Aug 21, 2017

A toolbox for comparative genomics.

drawm

Last released on Jan 12, 2017

A toolkit for creating publication-quality images of phylogenetic trees.

GenomeTk

Last released on Apr 24, 2016

A toolbox for working with genomes.

STAMP

Last released on Jun 26, 2015

A graphical software package for analyzing taxonomic and functional profiles.

dbb

Last released on May 9, 2015

Bin scaffolds into population genomes.

cleanm

Last released on Mar 4, 2015

A toolbox for improving population genomes.

linkm

Last released on Mar 4, 2015

Finds links between 16S reads and assembled contigs.

seqpy

Last released on Feb 3, 2014

seqpy

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