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Username    dparks
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19 projects

gtdbtk

Last released

A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

unitem

Last released

Ensemble binning strategies for combining the output of multiple binning methods.

checkm-genome

Last released

Assess the quality of putative genome bins.

phylorank

Last released

Assigns taxonomic ranks based on evolutionary divergence.

gtdb-validation-tk

Last released

A toolbox for validating the GTDB taxonomy.

biolib

Last released

Package for common tasks in bioinformatics.

ani-cache

Last released

Cache-aware ANI calculations.

comparem

Last released

A toolbox for comparative genomics.

refinem

Last released

A toolbox for improving population genomes.

GenomeTreeTk

Last released

A toolbox for working with genome trees.

gtdb-species-clusters

Last released

This toolkit provides functionality for establishing, updating, and validating the species clusters used in the Genome Taxonomy Database.

GenomeTk

Last released

A toolbox for working with genomes.

viewm

Last released

Visualization of functional modules to aid biological interpretation of genomes.

drawm

Last released

A toolkit for creating publication-quality images of phylogenetic trees.

STAMP

Last released

A graphical software package for analyzing taxonomic and functional profiles.

dbb

Last released

Bin scaffolds into population genomes.

cleanm

Last released

A toolbox for improving population genomes.

linkm

Last released

Finds links between 16S reads and assembled contigs.

seqpy

Last released

seqpy

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