28 projects
netcoloc
Analyze network colocalization of gene sets
cellmaps-coembedding
A tool to generate coembeddings from IF image embeddings and PPI network embeddings
cellmaps-generate-hierarchy
A tool to generate hierarchies from protein to protein interaction networks
cellmaps-vnn
The Cell Maps VNN Tool enables creation, training, and usage of an interpretable neural network-based models that predict cell response to a drug.
ndex2
Nice CX Python includes a client and a data model.
cellmaps-pipeline
Runs full Cell Maps pipeline
cellmaps-utils
Contains utilities needed by Cell Maps tools
cellmaps-ppi-embedding
A tool to generate embeddings from networks
cellmaps-image-embedding
A tool to generate embeddings from HPA IF images
cellmaps-hierarchyeval
A tool to evaluate hierarchies with known resources
cellmaps-imagedownloader
A tool to download specified image data from the Human Protein Atlas website using CSV file or to copy data from CM4AI dataset
cellmaps-ppidownloader
A tool to download AP-MS data for Cell Maps pipeline
cdapsutil
Python utilities for CDAPS
hidef
A package for building a hierarchy based on multiple partitions on graph nodes.
ndexstringloader
Loads STRING data into NDEx
ndexutil
Unsupported NDEx utilities
ndexsignorloader
Loads SIGNOR data into NDEx
ndexncipidloader
Loads NCI-PID data into NDEx
naga-gwas-rest
REST service for Network Assisted Genomic Analysis (NAGA)
ndexbiogridloader
Loads BioGRID data into NDEx
ndexgenehancerloader
Loads GeneHancer database to NDEx
d3r
Drug Design Data Resource CELPP Runner is an application to run the filtering, docking, and evaluation of new sequences from wwpdb
naga-gwas
Network Assisted Genomic Association
ndex-webapp-python-exporters
Command line exporters written in Python used by the NDex REST service
ndex2-dev
Nice CX Python includes a client and a data model.
ncmirtools
Set of commandline tools for NCMIR
chmutil
Utility package to run CHM jobs on clusters
ndex
NDEx Python includes a client and a data model.
