the genome-scale metabolic model test suite
Cache application for compounds, reactions, and enzymes
Generate cache assets from MetaNetX content.
TAXonomic Profile Aggregation and STAndardisation
Standard reaction Gibbs energy estimation for biochemical reactions.
Calculation of standard thermodynamic potentials of biochemical reactions.
List any package's direct dependencies and their versions.
Light adapter classes around Open Babel, RDKit, and ChemAxon for the functionality needed in eQulibrator.
Post-process conifer output for downstream statistical analysis.
SQLAlchemy ORM and pydantic data models for SQL storage and JSON serialization of COBRA components such as reactions, compounds, and compartments.
Transform MetaNetX components information and load them into SQL storage.
Parse and clean up information from MetaNetX (https://metanetx.org).
A Python client package for the Structurizr cloud service and on-premises installation.
Object-oriented software for dynamic flux-balance simulations.
Identify the latest DD-DeCaF tag on a particular Docker image.
Enrich the information coming from MetaNetX from additional sources.
Parse a more general search syntax to conform with a particular SQL dialect.
Semi-automated Sanger sequence analysis for transformation verification.
A Jinja2 extension that introduces the template filters basename and dirname.