Calculation of standard thermodynamic potentials of biochemical reactions.
Standard reaction Gibbs energy estimation for biochemical reactions.
Cache application for compounds, reactions, and enzymes
A Python client package for the Structurizr cloud service and on-premises installation.
List any package's direct dependencies and their versions.
Generate cache assets from MetaNetX content.
Transform MetaNetX components information and load them into SQL storage.
Parse and clean up information from MetaNetX (https://metanetx.org).
the genome-scale metabolic model test suite
Object-oriented software for dynamic flux-balance simulations.
Identify the latest DD-DeCaF tag on a particular Docker image.
Enrich the information coming from MetaNetX from additional sources.
SQLAlchemy ORM and pydantic data models for SQL storage and JSON serialization of COBRA components such as reactions, compounds, and compartments.
Parse a more general search syntax to conform with a particular SQL dialect.
Semi-automated Sanger sequence analysis for transformation verification.
A Jinja2 extension that introduces the template filters basename and dirname.