9 projects
votuderep
A CLI tool for dereplicating and filtering viral contigs
climb-cli
Utilities for working with CLIMB environments.
krautils
A python package for parsing, merging, and analyzing Kraken2 output files.
cdhit-reader
CD-HIT cluster parser
muxer
A small tmux-like terminal multiplexer written in Python.
lmodify
LMODify: Create LMOD packages based on Singularity images for HPC environments
nomenclator
Generate bacterial nomenclature Latin names using a combinatorial approach, as decribed in Pallen et al. (2021) 'The Next Million Names for Archaea and Bacteria'
kubexec
Execute commands and scripts on Kubernetes pods with Docker access
nbipackager
A package manager for Singularity images
