18 projects
cpg-workflows
CPG workflows for Hail Batch
cpg-utils
Library of convenience functions specific to the CPG
analysis-runner
Analysis runner to help make analysis results reproducible
sample-metadata
Python API for interacting with the Sample API system
bed-annotation
Genome capture target coverage evaluation tool
test-mqc-module
MultiQC module
test-mqc-core
cpg-gnomad
Hail utilities for the Genome Aggregation Database
larcoh
Pipeline for joint calling, sample and variant QC for WGS germline variant calling data in large cohorts
joint-calling
Pipeline for joint calling, sample and variant QC for WGS germline variant calling data
quast
Genome assembly evaluation tool
seqr-loader
The hail scripts in this repo can be used to pre-process variant callsets and export them to elasticsearch
cpg-hail
Scalable library for exploring and analyzing genomic data.
seqr-loader-batch
The hail scripts in this repo can be used to pre-process variant callsets and export them to elasticsearch
tsvtools
Utilities for operating with tab-separated files: viewing, filtering, reordering
versionpy
Small utility to track and bump the version of your python tool
ngs_utils
Utils for NGS pipelines by Vlad Saveliev
targqc
Genome capture target coverage evaluation tool
