21 projects
pmultiqc
Python package for quality control of proteomics datasets, based on multiqc package
qpx
Quantitative proteomics data toolkit — convert, transform, query, and validate QPX Parquet datasets
sdrf-pipelines
Validate and convert SDRF files to configuration files for pipelines.
quantms-rescoring
quantms-rescoring: Python scripts and helpers for the quantMS workflow
pyonsite
onsite: mass spectrometry post-translational localization tool
pridepy
Python Client library for PRIDE Rest API
pgatk
Python tools for proteogenomics
quantms-utils
Python scripts and helpers for the quantMS workflow
pyprideap
Python library for PRIDE Affinity Proteomics (PAD) archive data
quetzal-annotator
A peptide spectrum fragment ion annotation tool using the PSI mzPAF standard
deeplogbot
Bot detection and traffic classification for scientific data repository logs
mokume
A comprehensive proteomics quantification library supporting multiple methods (iBAQ, Top3, TopN, MaxLFQ, DirectLFQ)
pride-checksum
Computes SHA-1 checksum for all the specified files and writes to checksum.txt file.
ibaqpy
Python package to compute intensity base absolute expression values
pypgatk
Python tools for proteogenomics
quantmsio
Convert multiple files into quantms.io format
mztabpy
Python package to handle mztab files
bioconda2biocontainer
Tools to synchronize bioconda packages and versions with Biocontainer images
ddipy
Python client for OmicsDI Restful API
dleamse
dleamse's encoding and embedding methods, and dleamse's faiss index (IndexIDMap type) write.
sdrfcheck
Python tools for SDRF proteomics validation
